Resources
Software & Projects
The lab releases code, teaching notebooks, and reproducible project material through the ECLIPSE Lab GitHub organization.
MSPT_code
Code for multi-slice electron ptychographic tomography in three-dimensional phase-contrast microscopy beyond conventional depth-of-focus limits.
Python ptychography tomography
End2EndPtychoTomo_code
Reproducible code for end-to-end ptychographic electron tomography and near-isotropic sub-angstrom 3D phase-contrast imaging.
Python 4D-STEM reconstruction
PtychographicElectronTomography2023
Project code and supporting material for solving complex nanostructures with ptychographic atomic electron tomography.
electron tomography atomic structure
marimo
Interactive marimo notebooks and small apps from the group for computational microscopy workflows, demonstrations, and teaching.
notebooks interactive
More repositories are available at github.com/ECLIPSE-Lab.
Featured project pages
· End-to-End Ptychographic Electron Tomography — near-isotropic sub-Ångström (0.82 Å) 3D phase-contrast imaging at low dose; includes code, paper, video teaser, and an interactive slice viewer · Multi-slice Ptychographic Tomography (MSPT) — 3D phase-contrast microscopy beyond the depth-of-focus limit (2 Å axial / 0.7 Å transverse resolution); includes code and paper
Presentations & Teaching
Lecture slides & course materials
Slides, decks, and public course presentations from the ECLIPSE Lab teaching programme.
Data Science for Electron Microscopy
Lecture website and notebooks for data-driven electron microscopy, including practical computational microscopy material.
Machine Learning for Characterization and Processing
Course material on machine learning methods for experimental materials characterization and processing data.
Datasets
Public dataset releases are being prepared alongside reproducible code packages.
EMDatasets
Repository for electron microscopy datasets and dataset utilities from the lab.
released repository
Ptychographic tomography benchmark data
Benchmark datasets connected to ptychographic atomic electron tomography publications, intended for reproducibility and method comparison.
planned release
HyperScaleEM scale-bridging datasets
Large-volume 4D-STEM and hyperspectral electron tomography datasets generated through the HyperScaleEM project.
coming soon